The classes and functions used to tokenise a document in OSCAR3. My comments are in the functions under @lh359


ProcessingDocumentFactory.java:
-------------------------------
	ProcessingDocument makeTokenisedDocument(ITokeniser tokeniser, Document sourceDoc, boolean tokeniseForNEs, boolean mergeNEs, boolean runGenia)
          |
          V 
        ProcessingDocument makeTokenisedDocument(ITokeniser tokeniser, Document sourceDoc, boolean tokeniseForNEs, boolean mergeNEs, boolean runGenia, Document safDoc)
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          -------> XMLStrings.getInstance().getChemicalPlaces(procDoc.doc);
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          -------> tokeniser.tokenise(text, procDoc, offset, safDoc != null ? safDoc.getRootElement() : e, tokeniseForNEs, mergeNEs);


Tokeniser.java:
---------------
	public TokenSequence tokenise(String s, ProcessingDocument doc, int offset,
			Element elem, boolean tokeniseForNEs, boolean mergeNEs)
         |
         V
         List<Token> splitToken(Token token)
         |
         V
         List<Token> rawSplitToken(Token token)
                                                 |
                             -------------------- --------------------
                             |                                       |
                             V                                       V
List<Token> splitAt(Token token, int splitOffset)     List<Token> splitAt(Token token, int splitOffset0, int splitOffset1)
 
